PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00028.1_g00056.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 354aa    MW: 38921.5 Da    PI: 8.4629
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00028.1_g00056.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.1e-15143194455
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                              +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN+ L k l   +++
  Rsa1.0_00028.1_g00056.1 143 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 194
                              79****************************************9988776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-17140204IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829142193IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-11142194No hitNo description
SuperFamilySSF579594.44E-12143194No hitNo description
PfamPF001703.2E-13143191IPR004827Basic-leucine zipper domain
PROSITE patternPS000360147162IPR004827Basic-leucine zipper domain
PfamPF124981.1E-14211260IPR020983Basic leucine-zipper, C-terminal
PfamPF124988.8E-6270298IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSGNHLWSEL ASKERNGMNR SDSEWALQRF IQESEAYGVS VSGPPSPPPS VPVDSEEYRE  60
FLKSKLNLAC AAVAMKRGAF IKPQDTSGRS ENGGAYTSTA SEQGSLPSSK ATPVVSSAIT  120
SGSELSGDEE EADGETNMNP TNVKRVKRML SNRESARRSR RRKQAHLSEL ETQVSQLRVE  180
NSNLMKGLTD VTQTFNDAAV ENRVLKANIE TLRAKVKMAE ETVKRLTGLN PMFHTMPQVS  240
TVSNPSETTS DSLDTNVQVT TPEISSGNKS KALTGCKMNR TESMRRVASL EHLQKRIRSV  300
GDHDAVCRRV LSLELKTEPE DSVADSSPVA MSNKAEEKKR LRSPQAPKTM YEDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156163RRSRRRKQ
2158163SRRRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532650.0AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677979.10.0PREDICTED: basic leucine zipper 63-like
SwissprotB9DGI81e-158BZP63_ARATH; Basic leucine zipper 63
TrEMBLA0A078EWL30.0A0A078EWL3_BRANA; BnaC02g39310D protein
STRINGBra020620.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-151bZIP family protein